species:   Artha
pid:       MI0019253
parent:    ath-MIR5664
paralog:   
locus:     1:17386795-17387008
matures:   ['AUAGUCAAUUUUAUCGGUCUG', 'GACCGAUAAAAGUGACUAUAU']
srr:       SRR9216049
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram 1:17386795-17387008

1 out of bounds
8 alignments
6 proper strand
3 stranded perfect matches

                                                                *************************                                   **************************                                                                
UUGUCGUCUAUGAUGAAUAUAGUCAAUUUUAUCGGUCUGCAAUAGGCAAAUAAAACAUGCAAUUACUUUGGUCACGGACAAAUUAUUUUUAUGGCUAUUGAGACCAUCUUUAAGUAAUAAAUAAAAAAUACGAUUAUCCACGAACAAAGUAAUCAUCUGUUUUAUUUGCCUAUUGUAGACCGAUAAAAGUGACUAUAUAUAUCAUAGACGACAU
.((((((((((((((.(((((((((.(((((((((((((((((((((((((((((((....(((((((((.((..(((.....(((((((((((((....)).))))................)))))))......)))..)).)))))))))....))))))))))))))))))))))))))))))).))))))))).)))))))))))))).
------------------AUAGUCAAUUUUAUCGGUCUG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=0 c
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACCGAUAAAAGUGACUAUAU---------------- l=21 a=0 c*
------------------------------------------------------------------------------------------------------------------------------AAUACGAUUAUCCACGAACAAAGU---------------------------------------------------------------- l=24 a=2 ma
------------------------------------------------------------------UUUGGUCACGGACAAAUUAUUUU----------------------------------------------------------------------------------------------------------------------------- l=23 a=0 ma*

------------------------------------------------------------------------------------------------------------------------------AAUACGAUUAUCCACGAACAAAGU---------------------------------------------------------------- l=24 a=2 (ma)
----------------------------------------------------------------------------------------------------------------------------------------UCCACGAACAAAGUAAUCAUCUa------------------------------------------------------- l=23 a=1 
----------------------------------------------------------------------------------------------------------------------------------------------------------------UUUAUUUGCCUAUUGUAGACCa-------------------------------- l=22 a=1 
------------------------------------------------------------------------------------------------------------------------------------------------------------------UAUUUGCCUAUUGUAGACCGAUA----------------------------- l=23 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCUAUUGUAGACCu-------------------------------- l=15 a=1 

mb-01011
ax-1001011
ku-01
ss-111110101100
fn-001
